GUPPI


An R package and web application that expands on the protein and proteoform identifications contained in a .tdReport file generated by TDPortal or ProSightPD by adding data from the UniProt knowledgebase. It also allows for visualization of analyses of pre-fractionated or multiple-replicate data using UpSet, intersection degree and Waffle plots as well as heatmaps.

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Abundancer


An R package and web application that allows for the estimation of carbon-12 and nitrogen-14 abundances from mass spectra of intact proteins.

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Viztools


An R package and web application which provides tools for visualization of results from top-down proteomics studies of pre-fractionated biological samples and is based on novel visualizations developed for evaluation of the PEPPI-MS prefractionation method. Also suitable for visualization of samples fractionated using GELFrEE or comparison of biological or technical replicates. Does not require a .tdReport file for creating visualizations.

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The applications listed on this page are developed and hosted by the biological applications subgroup of the ICR User Facility of the National High Magnetic Field Laboratory and are available under an MIT license unless otherwise noted. This work is supported by the National Science Foundation Division of Chemistry through DMR-1644779 and the State of Florida. All software mentioned on this page or used in the creation of these applications are licensed as stated in their documentation and their inclusion does not imply support or endorsement from their respective developers.